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Late Fees on Filling GSTR 9 Returns

*To ease the burden on taxpayers, late fees for delayed filing of FORM GSTR-9/GSTR-9C and FORM GSTR-10 have been capped at Rs. 20,000 and Rs. 1,000, respectively, for submissions between 01.04.23 to 30.06.23. 

The due date for both forms is extended to 31.08.2023. (Notifications: No. 07/23-CT, 25/2023-CT, 08/23-CT, 26/2023-CT)

The timely filing of GSTR-9 returns is a vital responsibility for businesses. Late fees can be a concern, but with the right tools and strategies, you can streamline the process. Here’s how leveraging GST accounting software, and GST reconciliation software can be the key to efficient compliance.

Understanding GSTR-9 Filing Obligations

GSTR-9 is the annual return summarizing all outward and inward supplies made or received during the financial year. While it provides a comprehensive overview of transactions, late filings can lead to penalties, affecting both the financial and compliance aspects of a business.

More than a mere legal obligation, this annual return serves as a testament to a business’s commitment to transparent financial practices. Timely and accurate filing is, therefore, not just a regulatory requirement but a reflection of a business’s dedication to fiscal responsibility.

GSTR-9 Late Filing

Late filing of GSTR-9 exposes businesses to a cascade of challenges, primarily in the form of late fees. As dictated by the GST framework, a late filer is subject to a late fee of INR 100 for each day of delay, capped at 0.25% of the taxpayer’s turnover in the respective state or union territory. This section of the post will delve into the financial implications and the methodology behind calculating late fees.

Penalties for Non-Compliance

Non-compliance with GSTR-9 filing requirements goes beyond late fees; it opens the door to penalties. It’s imperative to understand the penalty structure to appreciate the financial repercussions fully. The penalty for not filing GSTR-9 within the due date is INR 100 per day under CGST and INR 100 under SGST, accumulating to a total penalty of INR 200 per day until the returns are filed. This segment will elaborate on the legal intricacies and the potential financial burden imposed by these penalties.

Interest Charges for Non-Compliance in GSTR-9 Explained

In addition to late fees, taxpayers are obligated to pay interest for non-compliance with GSTR-9 in the following scenarios:

  • Delayed GST Payment: Interest is levied at a rate of 18% per annum for delayed GST payments.
  • Excessive ITC Claim: Taxpayers facing an excess Input Tax Credit (ITC) claim are subject to an interest rate of 24% per annum.
  • Reduced Tax Liability: If there is a reduction in tax liability, the applicable interest rate is 18% per annum.

Other/Miscellaneous Penalties

  1. Cancellation of Registration: GST registration may be cancelled under various circumstances:
  • A regular taxpayer fails to file returns continuously for 6 months.
  • A composite taxpayer neglects to file returns for three quarters.
  • A person obtaining voluntary GST registration doesn’t commence business within 6 months of registration.
  • Obtaining GST registration through fraudulent means or willful misrepresentation.
  1. Seizure of Goods or Conveyance: Failure to account for taxable goods may lead to the seizure of goods or conveyances. Additionally, a fine of Rs. 10,000 or an amount equal to the evaded tax is imposed for offences such as supplying or receiving goods with the intent to evade tax, supplying taxable goods without GST registration, or using a conveyance for the transportation of goods in violation of GST provisions.
  2. Penalties under Section 122 of CGST Act: Section 122 of the CGST Act outlines offences that may result in penalties, including interest and taxes. Severity determines whether an offence attracts prosecution under Section 132.

Steps to Ensure Compliance with GSTR-9

Compliance with GSTR-9 is pivotal for avoiding late fees, penalties, and other consequences. Here are steps to ensure compliance:

  • Timely Filing: Ensure timely filing of GSTR-9 to avoid late fees, interest, and penalties. Maintaining a calendar for returns and recording entries promptly aids in meeting filing deadlines.
  • Accurate Reporting: Accuracy in reporting within the GSTR-9 annual return is crucial. Incorrect or false reporting may result in penalties and financial losses.
  • Reconciliation: Regularly reconcile data in GSTR-9 with other specified returns like GSTR-3B, GSTR-2A, etc. This reconciliation ensures accuracy in both filing the annual return and maintaining proper books of account.

By following these proactive steps, taxpayers can navigate the complexities of GSTR-9 compliance and steer clear of the associated financial implications.

Role of GST Accounting Software

  • GST accounting software simplifies the recording of transactions, ensuring accuracy and completeness. Automated entries reduce the risk of errors and streamline the overall process.
  • Many GST accounting software solutions come equipped with features like calendar reminders and alerts, helping businesses stay on top of crucial deadlines and avoid late fees.
  • Organize and manage your financial data seamlessly with GST accounting software. Categorize transactions and generate reports effortlessly, facilitating smooth GSTR-9 preparation.

Significance of GST Reconciliation Software

  • Error Identification and Correction: GST reconciliation software aids in identifying discrepancies between books of accounts and GST returns. By rectifying errors promptly, businesses can prevent delays in filing and minimize late fees.


  • Streamlined Reconciliation Process: Automate the reconciliation process with user-friendly interfaces, ensuring a hassle-free experience. This efficiency contributes to on-time GSTR-9 submissions.

Adopting Online GSTR Reconciliation Software

  • Real-Time Updates: Online GSTR reconciliation software provides real-time updates on changes in GST rules and deadlines, allowing businesses to adapt their strategies promptly.
  • Collaboration and Accessibility: Collaborate seamlessly with team members and access data from anywhere with online GSTR reconciliation software. This flexibility enhances collaboration and ensures timely filings.

Navigating late fees on GSTR-9 returns becomes a smoother journey with the integration of advanced tools like GST accounting software, and GST reconciliation software.  These solutions not only enhance accuracy and efficiency but also contribute to a proactive approach to GST compliance. 

As businesses evolve in the GST domain, leveraging technology becomes imperative for staying ahead and ensuring a seamless filing process. Choose smart GST solutions to master GSTR-9 compliance with confidence.



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